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jlduan

51 karma · joined February 6, 2015

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jlduan··on Snakemake – A framework for reproducible data analysis
I am very fond of https://zenodo.org, especially for small datasets for scientific publications.
jlduan··on Sunsetting Atom
VSCodium
jlduan··on Many researchers were not compliant with their published data sharing statement
This doesn't make sense. Being scooped means other people published the same idea before you.

If he truly believes the released data were fake, he can for sure publish his results. It’s not unusual for scientists to have different views on certain subjects. Some journals even have specific discussion sections for contradictory results. Finding the truth and correcting scientific records is also an achievement.

And at least, in the filed of biology/medicine, there are journals accepting “second first” papers, for example https://elifesciences.org/articles/30076 .

And quit a lot of publications are not grand breaking ideas. Incremental improvements can also be published.

I don’t understand your friend’s rationale to abandon the whole project he already started and didn’t want to find the truth and prove his theory (maybe it’s a different field thing).

jlduan··on Science of Fasting
Very interesting. I alway thought the key of longevity is speaking Japanese.
jlduan··on China's state media buys Meta ads pushing Russia's line on war
It might come as a surprise to you. But a lot of countries in Asia consider US and China are both bullies.

Just look how many Asia countries joined the US-lead economic sanction/coercion. Very few.

jlduan··on China's state media buys Meta ads pushing Russia's line on war
It is overly simplification. I think the sentiment in China is really not about supporting Russia; it is about anti-US.

Because quite a lot of people in China think US is organizing an Eastern NATO, to "destabilize" the whole region. For example, the nuclear-powered marine deal with Australia, etc. Biden’s first year was much harsher on China than Russia.

In 1999, NATO bombed the Chinese embassy, killing 3, that certainly did not help.

jlduan··on Recovery of deleted deep sequencing data sheds light on early Wuhan SARS-CoV-2 [pdf] (2021)
Nature News(at that time) https://www.nature.com/articles/d41586-021-01731-3

NYtimes: Those Virus Sequences That Were Suddenly Deleted? They’re Back https://www.nytimes.com/2021/07/30/science/coronavirus-seque...

Journal correction: https://onlinelibrary.wiley.com/doi/10.1002/smll.202104078

jlduan··on Full consensus for disconnecting Russia from SWIFT achieved, process has begun
It is a cross-border banking system, widely used to do international transactions.
jlduan··on Quarto: A scientific and technical publishing system built on Pandoc
Thanks for developing this wonderful tool. Just tried it. The HTML output looks great.

I use R Markdown extensively. I am wondering if R Markdown is retiring? Should I begin to switch to Quarto? And is there a way to change the default code font to ligatures fonts (for example Fira Code)?

jlduan··on Elizabeth Holmes found guilty
> It blows my mind that she was found guilty for defrauding investors, but not guilty for defrauding patients about their test results.

Not excusing it. But maybe the jurors think the doctors and/or insurance companies ordered/interpreted these tests have some responsibilities too?

jlduan··on Zotero: Free, easy-to-use tool to collect, organize, cite, and share research
It seems Zotero still doesn't support 3rd party cloud service (Dropbox, Google Drive, iCloud etc).

I really recommend Paperpile, especially its Chrome extension. In my opionion, nothing beats Google Docs on collaborative writing.

jlduan··on US military eyes prototype mobile nuclear reactor in Idaho
Nuclear submarine deal with Australia, now portable nuclear reactors. I really hope the world is not heading for nuclear arms race.
jlduan··on Jupyter Book
Looks quite good. Reminds me of the R Bookdown project (https://bookdown.org/).
jlduan··on Chinese activist Ai Weiwei says Credit Suisse closing foundation's bank account
That article mentioned Ai Weiwei spread misinformation doubted the result of the US election and was accused of spreading conspiracy theory on Twitter.

I have watched several documentaries produced by him in the past. Quite disappointed.

jlduan··on Chinese activist Ai Weiwei says Credit Suisse closing foundation's bank account
Used to be a fan of him until he actively spreading lies of US election. Turned me off.

https://www.wsj.com/articles/chinese-dissidents-back-trumps-...

jlduan··on The US Intelligence Community’s Assessment on Covid-19 Origins [pdf]
it seems a lot of unknowns. is there a clear next step?
jlduan··on Arm China Has Gone Rogue
i agree. the problem i have with the author's comment is "loyal". I think we need to distinguish people from justing trying to make money (apple, microsoft, tesla) and being CCP agents.

The author clearly suggests this American CEO is a "loyal CCP" agent. I am just curious how did she/he spot him?

jlduan··on Arm China Has Gone Rogue
You can't throw out accusations like that without evidence, what deep CCP contacts Allen Wu has? Elon Musk has a factory in Shanghai, is he "loyal to China with deep CCP contacts" too?
jlduan··on Arm China Has Gone Rogue
the rogue ceo allen wu is american.
jlduan··on Stop using Zoom, Hamburg’s data protection agency warns state government
After READING the article, it is about "U.S. surveillance law to be incompatible with EU privacy rights."
jlduan··on TikTok overtakes Facebook as most downloaded app
There are some problems about TikTok, but it just reminds me how fun internet could be.
jlduan··on How a fake network pushes pro-China propaganda
How The Epoch Times Created a Giant Influence Machine

"Since 2016, the Falun Gong-backed newspaper has used aggressive Facebook tactics and right-wing misinformation to create an anti-China, pro-Trump media empire."

https://www.nytimes.com/2020/10/24/technology/epoch-times-in...

jlduan··on Introducing Windows 11
Haven't been able to find the release schedule, when will MS deliver it?
jlduan··on Scientist finds early virus sequences that had been mysteriously deleted
i agree. sorry.
jlduan··on Scientist finds early virus sequences that had been mysteriously deleted
It is a political thing. Japan has DDBJ (https://www.ddbj.nig.ac.jp/index-e.html). EU has ENA/EBI (https://www.ebi.ac.uk/ena/browser/home). Maybe China wants to have its own.

More Chinese institutes are encouraging their scientists to deposit human bio-sample data to their own servers. Some grants even require them to do so.

jlduan··on Scientist finds early virus sequences that had been mysteriously deleted
it is possible they changed mind and chose to deposit there.
jlduan··on Scientist finds early virus sequences that had been mysteriously deleted
Because of the highly politicalized nature, some Chinese scientists begin to deposit SARS-CoV-2 sequences to their own databases (hosted in China).

https://ngdc.cncb.ac.cn/ncov/release_genome https://db.cngb.org/

jlduan··on TSMC looks to double down on U.S. chip factories as talks in Europe falter
It is a request from the U.S.

https://www.reuters.com/technology/chipmaker-tsmc-eyeing-exp...

jlduan··on Taiwan bans recruitment for jobs in China
yes. and tsmc even has a fab (28nm) in mainland china.
jlduan··on Taiwan bans recruitment for jobs in China
based on the article, it is not just semiconductor industry, it is ALL job listing. Wow, kinda of extreme.
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