Psychopharmacology (Berl). 2007 Jan;189(4):407-24. 3,4-Methylenedioxymethamphetamine (MDMA) neurotoxicity in rats: a reappraisal of past and present findings. Baumann MH, Wang X, Rothman RB. Free full-text: http://www.ncbi.nlm.nih.gov/pubmed/16541247
It has been previously claimed that overdoses of MDMA caused structural damage to serotonin axons ('axon pruning'), but there has never been any good evidence of this. Most evidence points to modulation of expression of serotonin transporters without damaging the axons themselves:
The Nature of 3, 4-Methylenedioxymethamphetamine (MDMA)-Induced Serotonergic Dysfunction: Evidence for and Against the Neurodegeneration Hypothesis. Biezonski DK, Meyer JS. Curr Neuropharmacol. 2011 Mar;9(1):84-90. Free full-text: http://www.ncbi.nlm.nih.gov/pubmed/21886568
The studies on humans that are often cited are typically unscientific because they're inclusive of individuals who also use other substances that are known to be neurotoxic such as alcohol or even methamphetamine. Also more importantly these recreational users are not given a supply of pure MDMA so it's safe to assume that some percentage of them are actually ingesting a cocktail of MDMA adulterated with other substances.
With all of this said, the verdict is still out on whether or not this is neurotoxic in human at normal doses.. there definitely is a long term tolerance that builds up to the effect of the drug but this alone does not prove anything about neurotoxicity.
It is definitely neurotoxic -- I could tell that the first time I took it -- but in my experience, the noticeable effects are temporary, being mostly gone in a couple of weeks and quite undetectable after a couple of months. As a software developer who works in a fairly technical field, I'm quite sensitive to how well my brain is working on any given day. I did not notice any long-term falloff in my abilities as a result of MDMA use.
All that said -- it does invite abuse, and I was abusing it. In 1990, my then-SO left me, and I realized I had to quit.
I wouldn't worry about occasional, supervised, therapeutic MDMA use by healthy individuals.
Doses in the 0.1-0.2g range would leave me fairly slow the next day, but that's it. With heavier doses I'd see after-effects for about a week (like reaching for my phone and pulling a lighter from my pocket, disconnecting in the middle of a conversation, losing track of time)
The only time it took a long time to fully recover (5-6 weeks, progressively) was after taking some twice in 2 consecutive days. Quantities weren't big, maybe 0.5g total, but the effects lasted really long.
I did that twice and was getting vertigo for a week after. Same with my friends.
I'd say fair amount per night is 2x0.1 grams per night.