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thisisnotmyname

1,351 karma · joined June 12, 2007

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thisisnotmyname··on Ask HN: Advice for a young, self-taught programmer
Sounds like you're doing great - you're miles ahead of where I was at 15, that's for sure. I think you need a mentor. Look to open source, local universities, etc. I've heard good things about the google summer of code.
thisisnotmyname··on Some Thoughts on Cancer from a Hacker
Some thoughts on cancer from a computation biologist working in the field of proteomics:

The author of the article mentions "a million different proteins" - The human genome contains about 20,000 genes, each coding for a different protein. Some small fraction of these genes would be involved in cancer, although the exact proportion is an interesting question which we're not entirely sure of. Perhaps with splice variants we're getting into the millions, but obviously you can't consider splice variants to be unique proteins. In any case, the problem is at least 2 orders of magnitude smaller than the author is thinking. Currently, there are 10s of thousands of cancer researchers worldwide, and hundreds of millions of patients, so the studies he talks about are quite feasible.

More troubling is the fact that with the huge amounts of money available, cancer biology attracts a gigantic number of researchers, many of whom are not doing especially great science. There are many, many different pathways in the body that can drive cancer generation, so you can study almost any of them and call yourself a cancer researcher, even though the chances are that most of that work won't lead directly to a cure.

My opinion: cancer is impossible to cure - people will always get cancer. There are deep, fundamental connections between our ability to evolve and adapt to our environment and the inevitability of getting cancer. My opinion on how to beat the disease: genomic profiling of an individual's propensity to develop cancer, early detection, anti-metastasis drugs and improved surgical procedures.

For anyone interested, there is a fantastic review called "The Hallmarks of Cancer", published in Cell that you should check out.

thisisnotmyname··on Battle In The Boardroom: Why Groupon Probably Paid Off Its Early Employees
Does that indicate that they thought the company's value was peaking?

More importantly, are we actually at the point where blogs in which a guy is admittedly just making things up about Groupon makes it to the front page?

thisisnotmyname··on A drug that can make your old memories like new
Just from the abstract, it looks like they're genetically increasing the amount of this particular protein (PKMζ) in the neocortex of rats, not giving them a drug. I'll read the article and revise.

Edit: The approach here is to create a virus that carries a gene coding for the protein they want to overexpress. The virus inserts the gene into the host cell's dna, which in this case is in the rat's neocortex. They say that expression of this protein is under control of a cytomegalovirus promoter, but I'm not sure if they need to use an additional drug to induce expression.

In any case, the HN title is incorrect.

thisisnotmyname··on "Find me stuff I'm interested in"
Google reader has the "Recommended Items" feature that's pretty close to what you're describing here.
thisisnotmyname··on New string search algorithm
For sequence alignment, the state of the art is BWA, which first compresses the "haystack", then builds a trie.

See http://en.wikipedia.org/wiki/Burrows–Wheeler_transform or http://bioinformatics.oxfordjournals.org/content/early/2009/...

thisisnotmyname··on What is the most effective thing you did to improve your programming skills?
Got employed writing software full time. Tried to make my job a little bit easier every day.
thisisnotmyname··on Being Poor Can Suppress Children's mental abilities, study finds
I wonder if they controlled for family size.

I imagine a big effect on a child's cognitive development comes from the amount of time they spend with their parent. If wealthier families have fewer children, and therefore have more parental attention per child, that could explain the disparity.

thisisnotmyname··on Gödel’s Lost Letter and P=NP
This sounds to me like what we now call the Busy Beaver problem. http://en.wikipedia.org/wiki/Busy_beaver
thisisnotmyname··on Speed-Freak Football
And here's a good place to do that: http://smartfootball.blogspot.com/2009/06/gus-malzahnauburn-...
thisisnotmyname··on Tim Ferriss Wants to Hack Your Body
It isn't an experiment without a control. There aren't any mentioned in the article - are they in the book?
thisisnotmyname··on Prof Gives Lecture to Prove He Knows Students Cheated; Over 200 Students Confess
As someone who works with data I can tell you that distributions can take on all kinds of unexpected shapes, especially when n=600. I think he's bluffing - the stats can't prove that anyone has cheated. That said, the deal he offered sounded pretty good when compared to the alternative.
thisisnotmyname··on Ask HN: What are you reading right now?
Dark Sun: The Making of the Hydrogen Bomb - Rhodes

Nudge: Improving Decisions About Health, Wealth, and Happiness - Thaler & Sunstein

Factorization Methods for Discrete Sequential Estimation - Bierman

thisisnotmyname··on Scientists suggest that cancer is purely man-made
Not to mention the sun.
thisisnotmyname··on Americans are wallowing in decline
The quote is: "Investors should remember that excitement and expenses are their enemies. And if they insist on trying to time their participation in equities, they should try to be fearful when others are greedy and greedy when others are fearful."

http://en.wikiquote.org/wiki/Warren_Buffett

thisisnotmyname··on What Is It Like To Be A Baby?
I would go further and say that "ontogeny recapitulates phylogeny" is misleading at best, just plain wrong at worst. Its an alluring concept that is unsupported by science.
thisisnotmyname··on Visual R
If you like this, check out the RedR project:

http://www.red-r.org/

thisisnotmyname··on PhD or Not PhD: that is the question
"If you are serious about going to grad school, I do not recommend [working in industry "for a year or two" and then appling to grad school "later."]"

This suprised me. It is what I did, as well as several other people in my year. The difference in maturity and competency between the people who have worked in industry and those who haven't is night and day. In my experience, people who have spent time in industry are much stronger PhD candidates.

thisisnotmyname··on "How hard can it be to implement?"
Is there really no simpler way to solve this problem?

"Moving a message needs to move all of the message's comments, and all of the comments' files, and all of the comments' files' versions."

Why can't you just change some top level reference in the database? I'm imagining a Projects table and a TodoLists table. Each TodoList has something like a projectID foreign key right? Why can't you just change that and automatically have all of the messages, etc, come along with the TodoList?

"But I hope you will see that sometimes even the simplest feature can be much more complicated than it looks from the outside."

I agree there, just wondering why the simple solution doesn't work in this case.

thisisnotmyname··on Tennis players should challenge more calls
It's too bad the article doesn't include more numbers on accuracy - it would be interesting to see if there's a big difference between the ruling of the on-court judges and the camera system.

It'd also be interesting to know how often close calls happen on important points, and how often those are challenged. My guess would be that challenges are almost always used when the point matters, and the low challenge rate is because most controversial calls happen in routine situations like 40-love.

thisisnotmyname··on This Is Why The American Dream Is Out Of Reach
What you say is true, but not the main point of the article. Its a kick-in-the-pants for young smart people to go and actually attempt to create something, instead of waiting for a job to come to them.
thisisnotmyname··on Problem Solving using Graph Traversals
Yeah, that would make more sense than what is currently there.
thisisnotmyname··on Luis von Ahn: Outsourcing My Research Group
There probably ought to be fewer phd students around, and more research tech jobs. But, I was under the impression that the current glut of grad students was because they were so much cheaper than techs?
thisisnotmyname··on How can I keep learning on my 1.5 hr commute?
I have a 40 minute commute (each way) that is mostly a train ride. When I first started with this commute I was very worried about wasting that much time every day, so I brought lots of printed material with me and would try to study on the train. Now that I've been doing it for 3 years I've completely abandoned that - I just use the commute as a mental break. After a hard day of work ~40 minutes of daydreaming is just what the doctor ordered before making the most of my evening.
thisisnotmyname··on Ask HN: What code editor do you use?
I use gvim whenever possible and vim otherwise.
thisisnotmyname··on Net Worth of Every U.S. President from Washington to Obama
Google chart:

http://chart.apis.google.com/chart?cht=bvg&chs=500&c...

I put 500k for the < 1 million people. I didn't know what to do with JFK, so I put him as 500k too. I duplicated Grover Cleveland so that the count would be correct. When I tried to add axis labels google said the url was too big.

thisisnotmyname··on Scientists Explain Why Computers Crash But We Don't
Couldn't getting sick be considered crashing? We obviously have a lot of redundancy (10^12 cells) so we don't "crash" unless a lot of those cells get sick. In E-coli, on the other hand, there are plenty of genes in which a single mutation kills the whole organism. (302 of them according to Japan's National Institute of Genetics: http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp)
thisisnotmyname··on Permanent Weight Loss
This has gotten a lot of upvotes in a very short time, so it must be ringing true with a lot of readers. I'd encourage some healthy skepticism.

1) It is really tempting to try to understand ourselves based on the assumed lives of our evolutionary ancestors, but the fact is we know almost nothing about their lives, and conclusions we draw from what we can guess are unlikely to be accurate.

2) There is not one citation in this entire article. This is all opinion, no matter how true it sounds.

3) He offers medical advice based solely on his personal experience. Sleep apnea may not be the same to all people.

thisisnotmyname··on [dead]
There's another common mistake I notice a lot, but I don't have a snappy name for it.

Maybe "Basing a conclusion on too little information."

As an example, I recently read an article (possibly on Hacker News?) in which a guy was working on his free-throw. He tried adding more backspin to his shot and made 4/4. He then tried 400 free throws using his old and new technique and found that in comparison, his old shot was better.

thisisnotmyname··on Time to Audit Your Facebook Privacy Settings, Here's How
Even easier, if you run the firefox plugin noscript, instant personalization is disabled for you automatically.
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