This is Thomas--founder of Smart Air. Thanks for the ideas!
I totally agree--we've been doing tests with more powerful fans, and the results are great. We'll be coming out with a more powerful model soon. Of course, it's a bit more expensive to get a more powerful fan.
We've avoided using pre-filters because we don't want to cut down on air flow (and HEPAs aren't all that expensive), but we'll probably use a pre-filter on the more powerful model.
About where to put the filter, is there a reason to put it on the intake side? I've heard several people make that argument, but I've never heard a good justification for it.