Yes, I understand the point. There are others who feel threatened and affected by people of different sexual orientations, even if those people never interact with them different than everyone else. You'll protest, no doubt, their feelings aren't legitimate - those are phobias while yours are rational feelings!
In pretty much every EU member state, you'll have to assume that random people on the street carry guns. Not everyone, not most, but some, none visibly. Would it make you more or less comfortable if the same number of people openly carried the same guns?
"Wholistic view of individual freedoms" sounds to me like a quote from the movie Thank You For Smoking. My memory is terrible, but it goes something like this (context, old movies are being edited to remove cigarettes in order to not promote smoking): "Aren't you altering history" - "No, we are improving history".
I find it much better to just flat out say "the collective over the individual", and not dance around it with fancy terms. Redefining liberties as privileges instead of rights isn't the way to go. Arguing for the merit of something is much better than trying to sneak it in by bending language and concepts.