SSL Scan is good, but the industry standard for server configuration scanning is SSL Labs:
First, the link is missing an 'l' at the end. [0] Second, exactly what makes SSL Labs the 'industry standard'? I'm well-aware of their services and use in the industry, but I would tend to think that the actual RFCs are industry standard, and not a rather specious high-school grading system for whether a particular TLS provider is secure.
So at this point the biggest thing I'm looking at is the "Chain issues" line that reads "Contains anchor". Assuming this has something to do with the bundle file I created?