TechRaptor, the site that hosts the article, is strongly associated with the GamerGate community, and that is the source of this concern of this new non-existent "danger". Standing up for "ethical journalism" was and continues to be one of GamerGate's most popular smoke screens. In this case, the NYT article was modified to include context that TechRaptor author didn't like. However, it doesn't look good to say "no, this totally wasn't about the fact that Ellen Pao was a woman" because that's easily disprovable: there are a trillion and a half Reddit threads out there displaying some of the nastiest sexist invective you've seen in a long time, all targeted at Ellen Pao. Instead, TechRaptor attempts to attack the article via a sidechannel discreditation. It attacks an unrelated feature of the article (that it was modified after it was published), which casts a pall over the entire thing, effectively undermining the main argument simply by association.
There is a ton of talk in this discussion thread about how the NYT article is "biased" or trying to present an "opinion". This seems to me like just another way of disagreeing with the argument without seeming like you're disagreeing with it. Claiming that this should be reported on like any other CEO being fired is not a cry for journalistic integrity, it's a request to willfully ignore the very, very special context that this firing took place in. The behavior of the Reddit community during this process, a behavior that was blatantly sexist and clearly occurred at an outsized volume and level of rancor because Ellen Pao was a woman, cannot and should not be ignored. To do so would be, well, unethical.