"Rape" implies a lack of consent, when there could have been consent. Animals are unable to give consent, so the idea of "rape" is nonsensical.
Of course, it's probably important to admit that 95% of Western civilization (and maybe all civilization; and maybe all of humanity) agrees with your perspective on this topic, to my dismay.
Edit: although when you consider all relevant issues about the morality of how humans use animals, the ethics of forcefully inseminating them come pretty low on the list, imo.
If anyone is committing rape on my farm it's the roosters, not me.