Not just you — love the Emacs bindings everywhere. It always throws me off on Windows when I'm trying to C-n and C-p around, getting hit with new document and printing dialogs all over the place :)
On a related note, I like the command key being solely responsible for most GUI application commands (so it doesn't conflict with the above), and would probably also want to incorporate that into an ideal Linux setup. I wonder if someone makes a Linux distro with this sort of thing preconfigured.
I don't prefer it, but it works.