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I would actually like this in an IDE. Visual Studio kind of does this with header comments but it would be great to be able to show/hide comments with links, rich text,...

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Vim's folding doesn't do this out-of-the-box, but you can set it up to do so. Clickable links aren't doable, though copying and opening in a browser tab is something like seven keystrokes on my current setup.

In modern Vim (with netrw), you can type `gx` when the cursor is over a URL to open it in your browser.

Kind of surprised Sublime Text 2 / 3 doesn't have a plugin that allows for annotation.

You might want to check this out: https://srclib.org/plugins/sublimetext/

srclib is the open-source library that powers Sourcegraph, a code search engine.

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