Yep. In my experience, I've seen that the issue isn't with Mesos the Apache project, but rather with Marathon and Chronos, which are the applications built by Mesosphere.
There's a big naming and marketing confusion at the moment with the open-source project and the VC-funded startup having such a similar name. It's unfortunately giving a bad reputation to the Mesos project.
Curious why there actually isn't a trademark issue here...?