- The exit nodes can see all traffic being routed through them[1]. Be wary of using Tor for regular web surfing - the exit node can not only monitor any unencrypted traffic, but can also inject browser exploits, attempt to strip SSL[2], etc.
- HTTPS Everywhere is only enabled for sites that the EFF has whitelisted[3]. Even if a site supports SSL, don't expect HTTPS Everywhere to automatically send you to the encrypted version - always doublecheck.
- NoScript is not enabled by default in the Tor Browser Bundle[4]. Don't expect it to protect you from malicious Javascript exploits out of the box.
If you absolutely must use Tor for something, the safest way to do so is to connect to Tor, make whatever connections you need to make (and only those connections), then immediately get off.
[1] https://www.torproject.org/docs/faq#CanExitNodesEavesdrop
[2] http://www.thoughtcrime.org/software/sslstrip/ (it's long, but the video is worth watching)
[3] https://www.eff.org/https-everywhere/faq#automatic-https
[4] https://www.torproject.org/docs/faq#TBBJavaScriptEnabled