For offices, it's likely more a matter of keeping pockets of hot/cold air (or other quality issues not related to temperature) from forming. Even just with lighting and office equipment, there's a fairly considerable energy flux into many office spaces, and without mixing you'll tend to get uncomfortable pockets forming.
Your #3 point strikes be as fairly valid: large electric motors do impose a very high load, and the current draw could be harmful to the motor (and switching / control circuits), while the imposed load might also be hard on other equipment. I doubt the energy usage argument (for cycling the motors off) really carries much weight, and it should be possible to idle such systems at low power. For most commercial buildings, you've got systems for heating, chilling, and air handling which are pretty much all operating simultaneously: you have a need for hot and cold air in different places, there are mixers which will deliver what's needed where it's needed (at least in theory), and the fans blow all the time.
Though I've only a pretty glancing familiarity with HVAC in general, not particularly my area of expertise.