Some cities are like that, and others aren't. People can vote with their feet. Guess which one people like better? (Hint: People have been moving out of dense cities for 100 years now.)
Are you planning on forcing people to accommodate themselves to your definition of the perfect city?
> We have disparate clusters/districts related to activities like 'work', 'play', 'shop', and 'sleep', rather than having these constructs evenly interspersed.
Is that supposed to be a bad thing? The world is not sim-city. Not everyone wants to live near a shopping area.
> We have supermarkets instead of markets.
Markets are not large enough to carry everything, so when I lived in a place like that I never went to the market, so I got the worst of both worlds: High density (i.e. traffic) plus a long drive.
I moved out.
You are acting as if the layout of cities was a commandment given from on high, but actually cities are laid out as they are because people like it that way.