It’s the paths. You can see another example of a maze here:
http://bl.ocks.org/mbostock/11357811
I made the paths thin (1px instead of 4px) to make it easier to see the tree on top of the maze. But to avoid the path/wall ambiguity, maybe it’d be better to start the paths 4px wide, transition to 1px, and then transition to the tree layout…