Currently I was about to write a service to autoconvert PDF documents uploaded via ownCloud into the said HTML5 document, but it seems that even though I've ssh, this server is managed and doesn't come with make and also has no poppler or fontforge libraries available. Meh :(
I'm thinking about compiling the binary with --prefix=~/.local/lib and copy the dependencies I've found to that directory on the server. Hope that works, otherwise I'll need to write an API for pdf2htmlEX on a server where I've root and upload modified & new pdf files to it, then wait for it to finish the html5 conversion and download the files to the right directory using curl. That'd be much more work than just dropping the binary onto the server and executing the service as cronjob for modfied or new files.
Any ideas on howto solve this cleverly?