But the average age of a house in japan is not even close to the average age of many San Francisco homes...
Not really true. There are hundreds of companies in every city specializing in what Japanese call "Reform", which means making older houses/building more modern (either through maintenance, renovation, replacement of installations and so on).
Is that more or less than one would expect for one of the wealthiest & most technologically sophisticated countries in the world?
With earthquakes, fire is the greatest threat after the shaking stops.
Actually, the low average age of houses in Japan is not at all due to the war (it's much smaller than 60 years), but due to cultural/economical issues: http://www.reddit.com/r/japan/comments/vv3bf/why_do_japanese...