Well, this is completely insane. The material exists elsewhere - what did the security services expect to achieve here?
The material was destroyed in this way because the alternative was to hand it all over to the UK government agency mentioned.
...what did the security services expect to achieve here?
To stop or severely impair The Guardian's ability to report classified materials.
And how will it do that, exactly, when copies of the material exist at its US offices?
It's still a threat of something worse in future, but in comparison with the way things have been going in western/northern countries recently, it was a pulled punch, a kind of ritual or "CYA" move.
GCHQ / CESG probably are not clueless.