http://www.sifma.org/research/statistics.aspx
It looks like the US bond market daily trading volume is about 25 times higher than the US stock market daily trading volume. However, that statistic is highly skewed by trading in US treasury bonds, which arguably should be a separate category. The same would presumably apply to the stats on market cap.
Also, it's not the relative size of the equities markets that's the problem; it's the amount of effort and talent that goes into what is essentially a zero-sum activity. Bonds and futures (and, to be fair, new stock issues) are positive sum. HFT is not.
(More precisely, HFT is only positive sum to the extent that it improves price discovery and therefore market efficiency; but I have a really hard time seeing how shaving a few more microseconds off trade times changes that significantly. It does, however, significantly change who is able to benefit from asymmetric information by inducing others to take the wrong end of zero-sum trades, which is what HFT is designed to do.)