Because the JSF is a shitty bomb truck too. It doesn't have the range, capacity or loiter time of nearly any other option. And for CAS vs bomb hauling, the JSF simply doesn't have the gun (and again, lacks the loiter time).
"As a note he says this will be the 'new mainstay of the air force' however we still have the F-22 as our air superiority fighter which is still believed to be better then anything out there, and indeed in their simulation the only limitation to the F-22 was there were too few of them."
We aren't dealing in hypotheticals where we can have any number of planes we want. That's the basic lesson of the RAND study: dollar for dollar you can have so many more SU-3 7 derivatives that even if the F-22's have a perfect kill probability, they quickly exhaust their magazines and have nothing else to do. And that's the outcome of the simulation: the F-22's live, most of the rest of the blue force dies, and red gains air superiority over the straight of Taiwan via the remaining flankers.
"It sure beats the Harrier and the F-18."
The FA-18 is more capable than the F-35 in both the A2A and A2G missions as a result of its superior capacity, range, and time on station. Comparing the FA-18 to the F-22 is more muddled, and IMHO comes down to an assesment of the relative performance of stealth vs EW. The prevailing attitude among the Russian military designers is that stealth is mitigated by state of the art communicating radars and passive emission detection (they claim detection of the F-22 at 50km on passive IR alone). And of course, as soon as the F-22 takes a shot stealth is no longer a consideration. Thankfully the F-22 is fast enough that it can turn and run. The F-35 can't, which is why they were decimated in the sim.