As to the control mice: my hunch would be that 'let the control animals eat at will' has changed over time. Maybe the diameter of sugar water tubes has increased slightly?
Certainly, our notion of what constitutes overweight has changed. If you look at photos of kids in the 1950s, almost all of them look extremely skinny. We may project that on lab animals, and size the 'eat at will' containers accordingly ("hm, the control mice get too fat. Let's make it a tiny bit harder for them too get their food")
Also, chances are that lab animals live at better controlled temperatures. Possibly, they used to eat less in hot summers because the temperature in their cages was higher in summer?
Of course, that's speculation, but it is the simplest explanation I can think of.
I know the research facilities there were the target of severe budget cuts several years ago. It's a shame, because this is an example of where other, unrelated research would benefit from the basic research of an environment mostly untouched by humans.