There is utterly no epidemiological evidence that eating zest has anything to do with any kind of fungal infection.
http://ucce.ucdavis.edu/files/datastore/234-1524.pdf
It's just that a more simple Google search like 'citrus antifungal' doesn't turn up anything.
No, but there is plenty of evidence that fungi develop resistance to anti-fungal drugs. If I really liked zest I might keep eating it, but since I actually don't like it in the first place I don't find that I lose anything by leaving it out of recipes and cocktails.
I certainly wouldn't say that it's definitely harmful, but when you're eating all these fungicides that have never been tested for longterm safety on humans then that's a risk one should be at least cognizant of.