My favorite example of this is how the linux kernel will actually give you morse code through the keyboard lights (num lock, scroll lock, caps lock) during a kernel panic [0].
[0]: http://www.linuxtoday.com/developer/2002072200326NWKNDV
[0]: http://www.linuxtoday.com/developer/2002072200326NWKNDV
Viruses that are intended to stay hidden and undiscovered is a new thing, relatively speaking.