Ah, OK. Yeah, the drone program is run by the CIA, although on May 20, just a month ago, Obama said that he was thinking about giving "some" control of it to the Pentagon - apparently for the first time. That was a surprise to most people who assumed the Pentagon had some sort of control over it before the announcement last month.
http://www.reuters.com/article/2013/05/21/us-usa-drones-idUS...
"President Barack Obama's administration has decided to give the Pentagon control of some drone operations against terrorism suspects overseas that are currently run by the CIA, several U.S. government sources said on Monday."
The article suggests that the Yemen assassination program will be transferred to the Pentagon, but the CIA will retain total control over the Pakistan assassination program to "maintain deniability for both the United States and Pakistan", which seems pretty Orwellian a statement given that they are obviously acknowledging it by saying they want to maintain deniability.
There's tons of articles on the drone program, the Stanford study I linked to above (Living Under Drones) is a very good intro.
There's also lots of coverage about the random nature of the assassinations. We're not at war with these countries so it can't be considered a military act of defense, at best it is an assassination. I'm not sure we should even call them assasinations though when the target is not known at all and some guy is just shooting people at random for fun. I believe the accurate term there is "genocide", "murder", and "psychopathic spree killing". Rather than a crazed individual though, it is a "normal" person, who has undergone some training, is working for a contractor who pays him, and the entire thing is managed by a state. Is a state running such programs a legitimate entity at this point? A pretty reasonable argument can be made for "no". It's interesting and disturbing from a psychological standpoint that after all the genocide in the 20th century and the talk against that genocide, that these sorts of state run programs still exist, and the sorts of countries that run them and what sort of values they claim to represent and defend.
http://www.salon.com/2013/06/06/cia_often_doesnt_know_who_it...