Could they use a drone instead of manned aircrafts to address point 2? So there's no need to shield and thus saving the weight.
Maybe yes with a drone based on TTL or some other "old" standard. Probably no with CMOS... Well, with a nuclear plant on board, I guess one can generate enough energy for a TTL computer.
Fiber optic cables aren't immune to this either : http://misspiggy.gsfc.nasa.gov/tva/meldoc/cabass/rad.htm