WRT to the problem of deploying prototyping/research code, there are the following unsolved problems that I'm aware of:
* Going from matrix operations over the whole timeseries (taking care to avoid problems with your algo looking ahead) for speed in a research setting to deploying to an environment that streams updates to the timeseries one at a time. I think that this is an area that haskell has the potential to excel at, given it's strong guarantees on structure.
* Concurrency. The options in python all suck to some degree - especially if you have to interact with C libraries or extensions. I don't think it will ever make sense to build your real time market date in python. Again here haskell has an advantage.
However the python ecosystem seems to be almost perfect for researchers:
* Excellent and flexible data slurping/munging/transforming.
* numpy, scipy, pandas, theano, scikits... 'nuff said
* ipython
* Cross platform
HTH