I do deadlifts, and they usually go just fine except when I've messed up my knees with squats, in which case then my knees will die during deadlifts too. Every time I tell myself I can get back into squats gradually I come back demoralized, and it poisons my other workouts too.
Read this for some things to try to protect the knee: http://www.t-nation.com/free_online_article/sports_body_trai...
If you can find an FMS certified strength trainer, there's a good chance they could help diagnose your situation. http://www.functionalmovement.com
At some point I read an article called "Everything you know about fitness is a lie" (which has been posted to HN several times), which has a section entitled, "You're only as strong as your weakest muscle". It talks about strengthening stabiliser muscles and exercises to rehabilitate weakened muscles.
The section also illustrates some of the better exercises you can do to alleviate injuries. In particular, there is an exercise for strengthening the knees - I can only describe as a straight leg lift while lying on one's side - which I tried for a couple of weeks, despite the flak I copped from my weightlifting compatriots.
I believe it works the quadriceps, and from my research, the exercise alleviates the difference in strength between the hamstring and the quadricep (don't quote me on this though), which seems to be the cause of my particular joint problem.
However, I've found I can't just go up to a certain point and stop the exercise. I need to continue with it as long as I'm doing squats. It's annoying, because none of my weightlifting crew have this problem, so I think it's got to do with the particulars of my genetics, but whatever works.
1: http://www.mobilitywod.com/2012/05/voodoo-band-your-patella-...
I would much recommend dry needling, it's not the same thing as acupuncture.
I'm pretty keen on dry needling of trigger points, given how many things it's fixing for me. But I'm wary of seeming like a new convert -- I think people should consider it as one possible cause of pain, often undiagnosed because it's not a commonly taught concept.
The amount of time I've spent trying to refine my form and then have it do nothing for me is demoralizing. I understand that's the only suggestion people can come up with, and I understand why. I mean, I'm just some random guy on the internet and from that perspective the likelihood that I'm just cluelessly doing it wrong is high. But there comes a point for me at which I can no longer be satisfied with that answer. I've got better form than hundreds of thousands of noobs who successfully do heavier squats than me every single week. I feel like I'm chasing a holy grail of form religiously, like if I could just find the right number of centimeters to separate my legs or the exact right angle of my knees or the exact right balance of weight on my heels then everything will work out.
To warm up for squats, try some or all of the following:
- using a rowing machine
- running for a little bit
- "high knee" jogging -- on the spot, lifting your knees up to your chest
- doing lots of bodyweight squats, then lots of squats with just the bar
- kettlebell swings (making sure to bend your knees and throw your butt back at the bottom of the swing)
- cycling (taking care with knee position if you get knee pain there -- I get knee pain cycling if I throw my knees out sideways; trying to lift them vertically works much better)
- If you're squatting high bar, switch to low bar because it puts less stress on the knees.
- Practice the "asian squat" stretch. Squat all the way down while keeping your weight on your heels and sit there for a while. Do you have a tendency to want to tip forward onto the balls of your feet when you do that? If so, that's a problem and you need to practice this position more.
- Get a foam roller and foam roll all sides of your legs (especially your IT band) and your glutes before squatting. I have chronic IT band tightness on one side that pulls on something in my knee and gives me pain around the patellar tendon, but it goes away when I foam roll the side of my leg.
- Do lots of warmup reps with bodyweight and/or just the bar.
- Don't stop at parallel. Squat below parallel, until you get a "bounce" from the stretch reflex of your hamstrings. If you stop at parallel, there is shearing force on the patellar tendon as that's where the tension is at the time when you change directions. But if you go all the way down, there is almost no load on your patellar tendon at the bottom when you change directions--the load is transferred to your glutes and hamstrings.
Based on what you've told me, I really think it's likely you aren't squatting down low enough, and that's irritating your patellar tendons.
Another possible thing to TRY (if it hurts don't do it) are Goblet Squats. Look up a youtube video and you will quickly see what it is. It is a very effective way of increasing hip mobility so that if/when you do try to do squats again your hip flexors will take the weight instead of your knees.
Also, (this is extremely important), google "low bar squat form." Anyone with knee issues should be doing low bar squats (in fact they are all I do, because they are as good as high bars but easier on the knees). If the bar isn't resting BEHIND the traps and on top of the delts, then you are doing a high bar squat which puts far more stress on the knees.
Look up videos by Rippetoe. He is controversial for advanced lifters, but for beginners he is a good resource. He is also a huge advocate of the low bar squat, and he has a video on Vimeo where he talks for several minutes in detail about positioning the bar for the low bar squat. Get the bar position correct, and the squat will take care of itself.
Squatting correctly is more nuanced that it would first appear. Starting Strength 3rd edition explains the mechanics of the squat in great detail and justifies why you should squat in a certain way.
Not everyone can squat but most people are just doing it wrong. It is such a useful exercise that you should be very sure that you actually can't before you give it up. You can get good critique of your form by posting a video at the starting strength forums where you might also find useful information from a search for patellar tendonitis/tendinitis.