How about Infrared Telescopes operating above the atmosphere? Right now, all fighter aircraft need to burn liquid fuels to extract energy in the form of rapid thermal expansion of gasses, which spew out the back or which operate turbines to run fans.
Large IR telescopes could be used to spot IR sources moving rapidly against the background, which could be localized and targeted by hypervelocity missiles. Stealth planes have a very reduced radar cross section, perhaps the size of a bird, but if you know exactly where the plane is, a radar guided missile could be made to home in on even a bird-sized return in the immediate vicinity.
Such telescopes could be deployed on suborbital rocket planes that can overfly the area on a moment's notice. They could also be placed on circling high altitude drones.
I'd bet that someone at DARPA has already gone through this thought process, and a program to disrupt 5th generation fighters already begun. (Not necessarily with this idea, though.)