(I'm the author of the blog post)
My thinking here is that Waymo has logged hundreds of millions of miles at this point (and even more in sim), and there are a lot of nines in their safety record. So even the rare edge cases should have come up. You make a good point that the deep water scenario may be not only rare, but also under-represented in the training data. On the other hand, you'd think they would have thought to explicitly train for it; it's not that obscure of a possibility.