If we're talking about something that's designed to be re-used then a totally different set of design considerations, as you outline above, become applicable.
> Frequently , after a hundred (or often much less) cycles in a MUAV a battery is retired from stressful missions
Are you talking about lipo pouch cells or li-ion cylindrical? Because if we're talking about state of the art high amp draw rated li ion cylindrical cells, 100 cycles on something that isn't heavily abused for heat and doesn't go below 15% state of charge should not significantly affect its lifespan. But if the batteries are being abused or every last bit of margin on range/payload is needed that it calls for almost "factory fresh" cells, or there's just absurd amounts of DoD money to throw at buying new battery packs, sure, I guess.