If I'm setting this up during the day, when I normally work, those external sites would easily end up with the "auto" behavior by this very poor design in the blog, when that is not my actual intent. This would result in me having to set it twice (the second time in the evening) to have my desired behavior which is a nuisance. The explicit option is better here, not whatever this silliness is in the article. [0]
At least I've read this article so sites and apps using this stupid option wouldn't be too big of a surprise to me, I'd hate to have to explain this to other people who haven't read it though. Principle of least surprise is a good thing, not something to deliberately work against like this author wants.
EDIT:
[0] Actually, this demonstrates a crucial flaw in the system's design. If I want to set the current default as the permanent setting, I have to wait until a particular time of day to do so. That's even worse than I'd previously realized. You can only set permanent light in the evening (or by changing your OS/browser settings, changing the site, and then changing OS/browser back). You can only set permanent dark during the day (without that same stupid exercise).
This is a terrible design concept.