NVD3 is one of many chart libraries that placed more emphasis on design than robustness. Having gone through many charts I wonder if any of these developers have heard of the Profiles tab on web inspector.
Something like NVD3 can be used on a static page that isn't live updated for a short time. But a long living application will have problems.
In other words don't worry. NVD3 wasn't very good. Go look at the d3 basic chart examples on the d3 example's site. It is not hard to build graphs with d3. You don't need NVD3.
Having said this, I thought the NVD3 editor was pretty cool. Better than the actual library.