Nah, the differences that can make for a dynamic friendship can be the ones that prevent cohabitation. If you're friends you don't have to care that they like to play loud music at 2 am, but you do when you live together.
I have/had friends whose pickiness/slovenliness was fine until we tried to live together, and then all that became a personality clash. It's entirely possible to have strong friendships with people you couldn't live with.