Generally, the data refresh will all happen in the background when the system is powered (depending on the power state). Performance is probably throttled during those operations, so you just see a slightly slower copy while this is happening behind the scenes.
The unused space decaying is probably not an issue, since the internal filesystem data is typically stored on a more robust area of media (an SLC location) which is less susceptible to data loss over time.
As far as how a user is supposed to manage it, maybe do an fsck every month or something? Using an SSD like that is probably ok most of the time, but might not be super great as a cold storage backup.