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I wonder if the users who flagged this could chime in to explain what is rule-breaking about this article?

I was wondering that myself too.

Also, do moderators ever move comments around? I thought one comment was a child to my comment last I looked, but now it's a top level comment to this post. I'm not sure if I am mistaken or a moderator moved things around.

This does happen from time to time. A moderator will "detach" a subthread[1] and move it to the top-level (usually also burying it at the bottom of the page, which tends to silence the discussion).

1: https://news.ycombinator.com/item?id=23441803

Thank you for clarifying!

In this case the comment that was promoted to the top-level has been consistently higher on the page (it’s the first comment still) than the comment it originally responded to.

Reply on news.ycombinator.com