IIRC, during the standarization of DES, the NSA has also modified some S-Boxes without giving any explanation. Only later, when differential cryptoanalysis became known to the public, it was clear that this was to strengthen DES against this particular attack (which was already known to the NSA).
The case here is more interesting though: It seems like you need to know some secret numbers (a sort of "private key" if you will) to be able to attack the PRNG. So it seems that the NSA could place a "safe" backdoor that even an attacker with the same cryptography knowledge as they have cannot break unless he himself possesses the "private key".