You don't want your agents to ask questions. You are thinking too short term. Its not ideal now, but agents that have to ask frequent questions are useless when it comes the vision of totally autonomous coding.
Humans ask questions of groups to fix our own personal short comings. It make no sense to try and master an internal system I rarely use, I should instead ask someone that maintains it. AI will not have this problem provided we create paths of observability for them. It doesn't take a lot of "effort" for them to completely digest an alien system they need to use.