I believe they are having trouble envisioning how you would launch rockets from a balloon city without disturbing the equilibrium of the balloon city because it is assumed that rockets thrusting down with great force would damage the balloon city in a way it would not easily recuperate from.
I also find the idea difficult to understand, but assume that is because it is in an area I know nothing about and the problems that I think sound bad are actually totally solvable engineering problems otherwise it would not be have been suggested as a solution by engineers expert in that area.
on edit: changed rocks to rockets