The point being, a theory only holds "true" until it's superseded by a better theory. Furthermore, multiple conflicting theories can be in use at the same time in the absence of a good unifying theory. In the end science neither says nor cares what is "true", it just looks for theories that are good at predicting stuff.
"Answers" in a common sense are supposed to be "true" and "permanent" or at least that's how I understand the word.
EDIT apparently the comment above got extended, so I'll address some of newer points too.
> You're just implicitly excluding all the parts where religious texts make empirical claims about reality as unimportant or allegory, because religion has already lost those arguments.
No, that's not what I'm saying. I'm saying all these claims can be as well true in a different (fully consistent and scientific) world. Furthermore, if you assume we live in a simulation then basically anything becomes possible in OUR world too, including Jesus walking on water turned into wine. It's just our simulation overlords had a good sense of humor.
The reason why we don't usually consider simulation theories is not because they're false (this can't be proven), but because they aren't practical and don't predict much. Even if we do live in a simulation, this simulation so far seems to follow some consistent internal "laws" so we can as well study those. Not that it means anything, but helps us to exterminate those who neglect these laws so it's a survivorship bias in action.