There were also a caravan of trucks removing large amounts of items before the raid. There are estimates Iran has 600 kg of enriched uranium. One kg of uranium is about the size as a kg of gold, or the size of a phone. So they probably removed some of the harder to replace equipment. Could have been anything. Servers, weapons and ammunition, etc.
Centrifuge manufacturing has come a long way in the previous 20 years. Precision machining has newer models with up to 200,000 rpm. "Centrus (formerly USEC) plans a centrifuge with 60 cm diameter, 12 m height and 900 m/s peripheral speed." Even with their centrifuge manufacturing facilities hit/destroyed, they could reconstitute within a year or two and continue the refinement process.