The reason why the policies restrict access to government systems isn’t because anyone thinks that those systems are magically immune to security bugs, but that there are entire teams of actually-qualified professionals monitoring them and proactively securing them. His phone is at risk to, say, a dodgy SMS/MMS message sent by anyone in the world who can get his number, potentially not needing more than a commercial spyware license, but his classified computer on a secure network can’t even receive traffic from them, has locked down configuration, and is monitored so a compromise would be detected a lot faster.
That larger context is what really matters. What they’re doing is like the owner of a bank giving his drunken golf buddy the job of running the business, and the first thing he does is start storing the ledger in his car because it’s more convenient. Even if he’s totally innocent and trying to do a good job, it’s just so much extra risk he’s not prepared to handle for no benefit to anyone else.