A Faraday cage will protect against an EM pulse? http://en.wikipedia.org/wiki/Faraday_cage
RepRap is a self-reproducible 3D printer? http://reprap.org/wiki/RepRap
And so with the RepRap (and some power source/converter) inside a faraday cage (with other physical protections as well), you're saying that this is the ultimate backup system for worst case scenarios? Do you have any links to provide more information about such a setup?
Yes, the Faraday cage protects against EM interference. But so does turning your computer off. Your main computer is fried? Pull out your old laptop and dust it off...
"CD-Rs are expected to have an average life expectancy of 10 years" -- http://en.wikipedia.org/wiki/CD-R#Expected_lifespan
CD/DVD experiential life expectancy is 2 to 5 years even though published life expectancies are often cited as 10 years, 25 years, or longer -- http://www.archives.gov/records-mgmt/initiatives/temp-opmedi...
So, if you could figure out a way to etch CDs instead of burning them, or make the pressing process cheap enough, you could make very durable CDs. Or if you want to make lots of durable copies of one CD, you can do that now with a glass master.
The write speed and data density are terrible, the drive, media and storage space cost a fortune, but dang if the data won't last a couple thousand years.