One of the things I suspect your team is doing wrong is you are using the PUC Lua C API instead of the LuaJIT FFI. That is one of those things which just completely destroys the "happy path". The PUC Lua C api is effectively a deprecated feature at this point. A few years ago you could have made the argument that the PUC Lua C API is more portable than LuaJIT which is absolutely true. But q66's (from Chimera Linux fame) cffi-lua project nullifies that argument since you can now use the luajit-style FFI in PUC Lua, which works on every platform that libffi supports.
Again I understand your frustrations with the language since you are working within a fundamentally adversarial environment. Perverse incentives can easily destroy any good patterns you can establish since the language is so flexible. I implore you to explore the language outside of your day job.