They could be two different reasons.
I do prefer Occom's razor for these things. We've seen a bunch extremely large celestial objects move in ways that our models cannot account for with the things that we can see. Sure, there could be more than one thing out there causing all of those extremely similar effects. But that's far less likely than there just being one reason.
I'll confess the paper is a bit over my head. Astrophysics was never my passion and I became a software engineer right out of college anyways, so I'm a little rusty. However, in the 2005 paper they state that the BAO, specifically the way that the BAO has propagated, can't be explained by baryonic matter alone, which in their words would show a much larger effect than observed. This seems to be yet another observation that is consistent with dark matter.
However, since you must be a working astrophysicist, could you enlighten me with what you think is wrong with the interpretation of those observations? Do you think the >3 sigma confidence isn't enough for astrophysics?
I am genuinely curious.