Perhaps not, lets wait until Valve has a chance to fix their D3D issues. It seems to me the blog post was more about success in ferreting out problems with drivers and APIs on Linux and Windows than pure Linux/OpenGL superiority.

I'm a longtime Linux user and there is little reason to assume Linux the is king of graphics. One thing worth pointing out is that Valve is using a Nvidia card with proprietary drivers which don't make use of any shared Linux graphics infrastructure (Gallium3D, etc). So this type of performance gain compared to Windows may not be repeatable with Intel or ATI cards.