Major distribution has always meant going through filters. The publishing houses reject most of the stuff that comes through their doors, and bookstores only buy a fraction of the stuff that the publishing houses put out. If you are scandalized that Apple rejects one book out of millions, I can only suppose it's because you aren't familiar with legacy publishing. Traditionally, only a tiny fraction of books ever had a chance to be seen by readers.
(I say this not to defend Apple, per se, but to illustrate how good writers have really got it now if this is considered a subject of outrage. Just ten years ago, getting rejected was the expected outcome of trying to get a book published!)