Do you mirror these data sets anywhere?
I did however just write a Python script to pull data.gov from archive.org and check the dataset count on the front page for all of 2024, here are the results:
As you can see, there were multiple drops on the order of ~10,000 during 2024. So it's not that unusual. There could be something bad going on right now, but just from the numbers I can't conclude that yet.
(Specifically it takes the first snapshot of every Wednesday of 2024).
If I get around to re-formatting my archives this week, I'll follow up on HN :).