Well, because you claimed pretty strongly this:

"Tools are tools. Whether its a hammer or a Scientific Linux Cluster the significant factor is the user, the carpenter or the physicist"

I agree with you that tools are a means to an end and that obviously the LHC is a lot more important that the choice of OS. I just think you were a bit too dismissive of tools in your post, though perhaps that wasn't your intent. If someone is going to rah-rah a tool, in this case Linux, they should be pointing out what role it played and what about its use was essential, not just that it was used.