This is all from memory, but I remember the beamline setup was to get protons from the accelerator there, smash them into a target, which produced various charged particles which could be focused with the magnets, sent down a long pipe where they would decay into neutrinos et al. Then, there's a near detector and a far detector (far detector deep underground in South Dakota). The aim is to measure the neutrino flavors at both detectors to better understand the flavor oscillations (and look for asymmetries between neutrino/anti-neutrino oscillations, hopefully to help explain the matter/antimatter asymmetry in the universe).
The particular bit I worked most on was studying the effects of adding an additional solid absorber at the end of the beamline, which was needed to absorb all the particles that didn't decay in the pipe. It would produce more neutrinos that were unfocused, so would affect the near-far flavor statistics (since these would be detected at the near detector but not the far since they were unfocused, ruining the statistics). It was a great intro to doing physics research :-)