If this is compared to <= 0x123 (before the introduction of "Intel Default Settings") then this drop may be attributed to low AC Load Line configuration in previous configuration, which essentially undervolting the CPU out-of-the-box. >= 0x125 BIOS usually bumped this up/lower this down to Intel's recommendation. It could be very possible that AC_LL is setting too high on the MSI board after the fix.
It's still very strange though, even if AC_LL is the culprit, that 253W is running 20% slower than 125W. For what it's worth, I have two systems running 13900K and 13700K both with ASRock board, and I see no difference in MT performance with 1-2% drop in ST (though 13700K is running with PL1=PL2=125W, but that shouldn't affect ST).